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Rubidium in PDB 1nhh: Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium

Protein crystallography data

The structure of Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium, PDB code: 1nhh was solved by X.Hu, M.Machius, W.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.40
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.747, 71.171, 189.615, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 24.9

Other elements in 1nhh:

The structure of Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Rubidium Binding Sites:

The binding sites of Rubidium atom in the Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium (pdb code 1nhh). This binding sites where shown within 5.0 Angstroms radius around Rubidium atom.
In total only one binding site of Rubidium was determined in the Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium, PDB code: 1nhh:

Rubidium binding site 1 out of 1 in 1nhh

Go back to Rubidium Binding Sites List in 1nhh
Rubidium binding site 1 out of 1 in the Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 1 of Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb470

b:28.7
occ:1.00
O A:ALA73 2.9 14.2 1.0
O A:ALA76 3.0 18.2 1.0
O A:ALA71 3.3 17.7 1.0
O2A A:ANP380 3.3 19.1 1.0
O A:GLY96 3.4 18.0 1.0
O A:LEU70 3.5 20.9 1.0
C A:ALA71 3.6 17.8 1.0
C5' A:ANP380 3.7 14.9 1.0
C A:GLY96 3.8 19.6 1.0
C A:ALA76 4.0 17.5 1.0
C A:ALA73 4.0 17.5 1.0
CB A:ALA76 4.1 13.9 1.0
N A:ALA73 4.1 16.0 1.0
N A:ALA76 4.1 17.8 1.0
N A:LEU72 4.2 16.4 1.0
C A:LEU72 4.2 16.2 1.0
CA A:ALA76 4.3 17.7 1.0
CA A:GLY96 4.3 18.1 1.0
CA A:ALA71 4.3 17.2 1.0
CA A:LEU72 4.4 16.0 1.0
PA A:ANP380 4.4 18.6 1.0
O5' A:ANP380 4.4 18.6 1.0
O3A A:ANP380 4.5 19.1 1.0
C A:LEU70 4.6 19.1 1.0
N A:GLU97 4.6 21.7 1.0
CA A:ALA73 4.7 16.8 1.0
C4' A:ANP380 4.8 17.4 1.0
CB A:LEU99 4.8 14.7 1.0
O A:LEU72 4.8 16.8 1.0
N A:ALA71 4.9 19.6 1.0
CA A:GLU97 5.0 21.4 1.0
N A:ALA100 5.0 19.0 1.0

Reference:

X.Hu, M.Machius, W.Yang. Monovalent Cation Dependence and Preference of Ghkl Atpases and Kinases Febs Lett. V. 544 268 2003.
ISSN: ISSN 0014-5793
PubMed: 12782329
DOI: 10.1016/S0014-5793(03)00519-2
Page generated: Wed Dec 16 02:06:36 2020

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