Rubidium in PDB 3jxd: Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+

The structure of Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+, PDB code: 3jxd was solved by D.Watkins, G.B.Koudelka, L.D.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.34 / 2.10
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	64.007, 64.007, 101.623, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 22.5

The binding sites of Rubidium atom in the Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+ (pdb code 3jxd). This binding sites where shown within 5.0 Angstroms radius around Rubidium atom.
In total 2 binding sites of Rubidium where determined in the Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+, PDB code: 3jxd:
Jump to Rubidium binding site number: 1; 2;

Rubidium binding site 1 out of 2 in the Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 1 of Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Rb101 b:47.0 occ:0.30 RB A:RB41 2.1 48.3 0.3 O6 A:DG40 3.1 34.4 1.0 N4 B:DC1 3.7 31.7 1.0 C6 A:DG40 4.2 32.9 1.0 C7 A:DT39 4.3 25.0 1.0 N7 A:DG40 4.6 34.7 1.0 O4 A:DT39 4.8 23.6 1.0 C5 A:DG40 4.8 30.7 1.0 C4 B:DC1 4.8 33.0 1.0 C5 A:DT39 4.9 24.6 1.0 O B:HOH317 4.9 41.7 1.0

Rubidium binding site 2 out of 2 in the Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 2 of Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Rb41 b:48.3 occ:0.30 RB A:RB101 2.1 47.0 0.3 O6 A:DG40 2.8 34.4 1.0 N7 A:DG40 2.9 34.7 1.0 C6 A:DG40 3.5 32.9 1.0 C5 A:DG40 3.5 30.7 1.0 C7 A:DT39 3.7 25.0 1.0 C5 A:DT39 3.9 24.6 1.0 C8 A:DG40 4.1 33.7 1.0 C6 A:DT39 4.3 24.1 1.0 C4 A:DT39 4.4 22.6 1.0 O4 A:DT39 4.6 23.6 1.0 N4 B:DC1 4.7 31.7 1.0 C4 A:DG40 4.8 29.8 1.0 N1 A:DG40 4.9 32.5 1.0

D.Watkins, S.Mohan, G.B.Koudelka, L.D.Williams. Sequence Recognition of Dna By Protein-Induced Conformational Transitions. J.Mol.Biol. V. 396 1145 2010.
ISSN: ISSN 0022-2836
PubMed: 20053356
DOI: 10.1016/J.JMB.2009.12.050