Atomistry » Rubidium » PDB 1dge-4z3p » 3jxd
Atomistry »
  Rubidium »
    PDB 1dge-4z3p »
      3jxd »

Rubidium in PDB 3jxd: Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+

Protein crystallography data

The structure of Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+, PDB code: 3jxd was solved by D.Watkins, G.B.Koudelka, L.D.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.34 / 2.10
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 64.007, 64.007, 101.623, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 22.5

Rubidium Binding Sites:

The binding sites of Rubidium atom in the Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+ (pdb code 3jxd). This binding sites where shown within 5.0 Angstroms radius around Rubidium atom.
In total 2 binding sites of Rubidium where determined in the Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+, PDB code: 3jxd:
Jump to Rubidium binding site number: 1; 2;

Rubidium binding site 1 out of 2 in 3jxd

Go back to Rubidium Binding Sites List in 3jxd
Rubidium binding site 1 out of 2 in the Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 1 of Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb101

b:47.0
occ:0.30
RB A:RB41 2.1 48.3 0.3
O6 A:DG40 3.1 34.4 1.0
N4 B:DC1 3.7 31.7 1.0
C6 A:DG40 4.2 32.9 1.0
C7 A:DT39 4.3 25.0 1.0
N7 A:DG40 4.6 34.7 1.0
O4 A:DT39 4.8 23.6 1.0
C5 A:DG40 4.8 30.7 1.0
C4 B:DC1 4.8 33.0 1.0
C5 A:DT39 4.9 24.6 1.0
O B:HOH317 4.9 41.7 1.0

Rubidium binding site 2 out of 2 in 3jxd

Go back to Rubidium Binding Sites List in 3jxd
Rubidium binding site 2 out of 2 in the Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 2 of Crystal Structure of the P22 C2 Repressor Protein in Complex with Synthetic Operator 9C in the Presence of Rb+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb41

b:48.3
occ:0.30
RB A:RB101 2.1 47.0 0.3
O6 A:DG40 2.8 34.4 1.0
N7 A:DG40 2.9 34.7 1.0
C6 A:DG40 3.5 32.9 1.0
C5 A:DG40 3.5 30.7 1.0
C7 A:DT39 3.7 25.0 1.0
C5 A:DT39 3.9 24.6 1.0
C8 A:DG40 4.1 33.7 1.0
C6 A:DT39 4.3 24.1 1.0
C4 A:DT39 4.4 22.6 1.0
O4 A:DT39 4.6 23.6 1.0
N4 B:DC1 4.7 31.7 1.0
C4 A:DG40 4.8 29.8 1.0
N1 A:DG40 4.9 32.5 1.0

Reference:

D.Watkins, S.Mohan, G.B.Koudelka, L.D.Williams. Sequence Recognition of Dna By Protein-Induced Conformational Transitions. J.Mol.Biol. V. 396 1145 2010.
ISSN: ISSN 0022-2836
PubMed: 20053356
DOI: 10.1016/J.JMB.2009.12.050
Page generated: Wed Dec 16 02:06:48 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy