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Rubidium in PDB 3mku: Structure of A Cation-Bound Multidrug and Toxin Compound Extrusion (Mate) Transporter

Protein crystallography data

The structure of Structure of A Cation-Bound Multidrug and Toxin Compound Extrusion (Mate) Transporter, PDB code: 3mku was solved by X.He, P.Szewczyk, A.Karyakin, M.Evin, W.-X.Hong, Q.Zhang, G.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 4.20
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 159.800, 241.850, 46.150, 90.00, 90.00, 90.00
R / Rfree (%) 30.9 / 34.2

Rubidium Binding Sites:

The binding sites of Rubidium atom in the Structure of A Cation-Bound Multidrug and Toxin Compound Extrusion (Mate) Transporter (pdb code 3mku). This binding sites where shown within 5.0 Angstroms radius around Rubidium atom.
In total 2 binding sites of Rubidium where determined in the Structure of A Cation-Bound Multidrug and Toxin Compound Extrusion (Mate) Transporter, PDB code: 3mku:
Jump to Rubidium binding site number: 1; 2;

Rubidium binding site 1 out of 2 in 3mku

Go back to Rubidium Binding Sites List in 3mku
Rubidium binding site 1 out of 2 in the Structure of A Cation-Bound Multidrug and Toxin Compound Extrusion (Mate) Transporter


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 1 of Structure of A Cation-Bound Multidrug and Toxin Compound Extrusion (Mate) Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb5001

b:0.7
occ:1.00
CE1 A:PHE259 2.3 0.2 1.0
OH A:TYR367 2.5 0.5 1.0
CD1 A:PHE259 2.8 0.2 1.0
CZ A:PHE259 3.2 0.2 1.0
CZ A:PHE429 3.8 0.2 1.0
CZ A:TYR367 3.9 0.5 1.0
CE1 A:PHE429 3.9 0.2 1.0
CG A:PHE259 4.0 0.2 1.0
CE2 A:PHE259 4.2 0.2 1.0
CE2 A:TYR367 4.5 0.5 1.0
CD2 A:PHE259 4.5 0.2 1.0
CE1 A:TYR367 4.9 0.5 1.0
CE2 A:PHE429 5.0 0.2 1.0

Rubidium binding site 2 out of 2 in 3mku

Go back to Rubidium Binding Sites List in 3mku
Rubidium binding site 2 out of 2 in the Structure of A Cation-Bound Multidrug and Toxin Compound Extrusion (Mate) Transporter


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 2 of Structure of A Cation-Bound Multidrug and Toxin Compound Extrusion (Mate) Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Rb5002

b:1.0
occ:1.00
CE1 B:PHE259 2.8 72.5 1.0
OH B:TYR367 2.9 90.3 1.0
CD1 B:PHE259 3.0 72.5 1.0
CZ B:PHE259 3.8 72.5 1.0
CZ B:PHE429 4.1 0.9 1.0
CG B:PHE259 4.1 72.5 1.0
CE1 B:PHE429 4.2 0.9 1.0
CZ B:TYR367 4.2 90.3 1.0
CE2 B:PHE259 4.7 72.5 1.0
CD2 B:PHE259 4.8 72.5 1.0
CB B:PHE259 4.9 72.5 1.0
CE2 B:TYR367 5.0 90.3 1.0

Reference:

X.He, P.Szewczyk, A.Karyakin, M.Evin, W.X.Hong, Q.Zhang, G.Chang. Structure of A Cation-Bound Multidrug and Toxic Compound Extrusion Transporter. Nature V. 467 991 2010.
ISSN: ISSN 0028-0836
PubMed: 20861838
DOI: 10.1038/NATURE09408
Page generated: Wed Dec 16 02:06:48 2020

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