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Rubidium in PDB 4ngi: Previously De-Ionized Hew Lysozyme Crystallized in 1.0 M Rbcl and Collected at 125K

Enzymatic activity of Previously De-Ionized Hew Lysozyme Crystallized in 1.0 M Rbcl and Collected at 125K

All present enzymatic activity of Previously De-Ionized Hew Lysozyme Crystallized in 1.0 M Rbcl and Collected at 125K:
3.2.1.17;

Protein crystallography data

The structure of Previously De-Ionized Hew Lysozyme Crystallized in 1.0 M Rbcl and Collected at 125K, PDB code: 4ngi was solved by P.Benas, L.Legrand, M.Ries-Kautt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.89 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.037, 79.037, 36.792, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 21.5

Other elements in 4ngi:

The structure of Previously De-Ionized Hew Lysozyme Crystallized in 1.0 M Rbcl and Collected at 125K also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Rubidium Binding Sites:

The binding sites of Rubidium atom in the Previously De-Ionized Hew Lysozyme Crystallized in 1.0 M Rbcl and Collected at 125K (pdb code 4ngi). This binding sites where shown within 5.0 Angstroms radius around Rubidium atom.
In total only one binding site of Rubidium was determined in the Previously De-Ionized Hew Lysozyme Crystallized in 1.0 M Rbcl and Collected at 125K, PDB code: 4ngi:

Rubidium binding site 1 out of 1 in 4ngi

Go back to Rubidium Binding Sites List in 4ngi
Rubidium binding site 1 out of 1 in the Previously De-Ionized Hew Lysozyme Crystallized in 1.0 M Rbcl and Collected at 125K


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 1 of Previously De-Ionized Hew Lysozyme Crystallized in 1.0 M Rbcl and Collected at 125K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb201

b:34.7
occ:0.76
 O A:HOH431 2.8 34.3 0.9
O A:ASN74 2.9 22.8 1.0
O A:ARG73 3.0 27.4 0.5
O A:ARG73 3.0 26.7 0.5
OD1 A:ASN77 3.0 31.2 1.0
O A:HOH414 3.6 27.4 0.9
C A:ASN74 3.7 22.6 1.0
CG A:ASN77 3.9 31.0 1.0
ND2 A:ASN77 4.1 31.7 1.0
C A:ARG73 4.2 25.1 0.5
C A:ARG73 4.2 24.0 0.5
CB A:ASN74 4.2 21.2 1.0
CA A:ASN74 4.4 22.4 1.0
N A:LEU75 4.5 20.5 1.0
CA A:LEU75 4.6 23.1 1.0
N A:ASN74 4.8 21.8 1.0
CG A:ASN74 4.8 19.9 1.0
CD2 A:LEU75 4.9 30.1 1.0

Reference:

P.Benas, N.Auzeil, L.Legrand, F.Brachet, A.Regazzetti, M.Ries-Kautt. Weak Protein-Cationic Co-Ion Interactions Addressed By X-Ray Crystallography and Mass Spectrometry. Acta Crystallogr.,Sect.D V. 70 2217 2014.
ISSN: ISSN 0907-4449
PubMed: 25084340
DOI: 10.1107/S1399004714011304
Page generated: Thu Oct 10 12:04:21 2024

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