Atomistry » Rubidium » PDB 1dge-4z3p » 4ngj
Atomistry »
  Rubidium »
    PDB 1dge-4z3p »
      4ngj »

Rubidium in PDB 4ngj: Dialyzed Hew Lysozyme Batch Crystallized in 1.0 M Rbcl and Collected at 100 K

Enzymatic activity of Dialyzed Hew Lysozyme Batch Crystallized in 1.0 M Rbcl and Collected at 100 K

All present enzymatic activity of Dialyzed Hew Lysozyme Batch Crystallized in 1.0 M Rbcl and Collected at 100 K:
3.2.1.17;

Protein crystallography data

The structure of Dialyzed Hew Lysozyme Batch Crystallized in 1.0 M Rbcl and Collected at 100 K, PDB code: 4ngj was solved by P.Benas, L.Legrand, M.Ries-Kautt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.51 / 1.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.024, 79.024, 37.216, 90.00, 90.00, 90.00
R / Rfree (%) 14.3 / 17.3

Other elements in 4ngj:

The structure of Dialyzed Hew Lysozyme Batch Crystallized in 1.0 M Rbcl and Collected at 100 K also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Rubidium Binding Sites:

The binding sites of Rubidium atom in the Dialyzed Hew Lysozyme Batch Crystallized in 1.0 M Rbcl and Collected at 100 K (pdb code 4ngj). This binding sites where shown within 5.0 Angstroms radius around Rubidium atom.
In total only one binding site of Rubidium was determined in the Dialyzed Hew Lysozyme Batch Crystallized in 1.0 M Rbcl and Collected at 100 K, PDB code: 4ngj:

Rubidium binding site 1 out of 1 in 4ngj

Go back to Rubidium Binding Sites List in 4ngj
Rubidium binding site 1 out of 1 in the Dialyzed Hew Lysozyme Batch Crystallized in 1.0 M Rbcl and Collected at 100 K


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 1 of Dialyzed Hew Lysozyme Batch Crystallized in 1.0 M Rbcl and Collected at 100 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb201

b:24.7
occ:0.72
 OD1 A:ASN77 2.9 22.8 1.0
O A:ASN74 2.9 14.2 1.0
O A:HOH301 2.9 29.8 0.7
O A:HOH302 2.9 27.3 0.9
O A:ARG73 2.9 16.8 1.0
O A:HOH303 3.6 27.7 0.8
C A:ASN74 3.6 13.3 1.0
CG A:ASN77 3.8 18.4 1.0
ND2 A:ASN77 4.1 24.2 1.0
C A:ARG73 4.1 15.3 1.0
CB A:ASN74 4.2 14.5 1.0
CA A:ASN74 4.4 13.9 1.0
N A:LEU75 4.4 13.6 1.0
CA A:LEU75 4.5 13.9 1.0
N A:ASN74 4.7 14.6 1.0
CG A:ASN74 4.7 14.7 1.0
O A:HOH460 4.8 33.5 0.9
ND2 A:ASN74 5.0 16.0 1.0
CD2 A:LEU75 5.0 21.2 1.0

Reference:

P.Benas, N.Auzeil, L.Legrand, F.Brachet, A.Regazzetti, M.Ries-Kautt. Weak Protein-Cationic Co-Ion Interactions Addressed By X-Ray Crystallography and Mass Spectrometry. Acta Crystallogr.,Sect.D V. 70 2217 2014.
ISSN: ISSN 0907-4449
PubMed: 25084340
DOI: 10.1107/S1399004714011304
Page generated: Thu Oct 10 12:04:31 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy