Rubidium in PDB 5yck: Crystal Structure of A Mate Family Protein Derived From Camelina Sativa at 2.3 Angstrom

The structure of Crystal Structure of A Mate Family Protein Derived From Camelina Sativa at 2.3 Angstrom, PDB code: 5yck was solved by Y.Tanaka, T.Tsukazaki, S.Iwaki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.62 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.650, 69.240, 116.950, 90.00, 90.00, 90.00
R / Rfree (%)	22.3 / 25.4

The binding sites of Rubidium atom in the Crystal Structure of A Mate Family Protein Derived From Camelina Sativa at 2.3 Angstrom (pdb code 5yck). This binding sites where shown within 5.0 Angstroms radius around Rubidium atom.
In total 2 binding sites of Rubidium where determined in the Crystal Structure of A Mate Family Protein Derived From Camelina Sativa at 2.3 Angstrom, PDB code: 5yck:
Jump to Rubidium binding site number: 1; 2;

Rubidium binding site 1 out of 2 in the Crystal Structure of A Mate Family Protein Derived From Camelina Sativa at 2.3 Angstrom


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 1 of Crystal Structure of A Mate Family Protein Derived From Camelina Sativa at 2.3 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ A:Rb501 b:87.2 occ:1.00 O A:HOH676 2.9 32.3 1.0 O A:HOH654 3.1 26.9 1.0 O A:HOH614 3.6 30.7 1.0 CG A:GLU265 3.7 29.6 1.0 CB A:GLU265 4.0 28.8 1.0 RB A:RB502 4.1 93.1 1.0 OH A:TYR410 4.2 24.9 1.0 CD A:GLU265 4.3 32.2 1.0 CZ A:TYR410 4.4 24.7 1.0 OE1 A:GLU265 4.5 33.1 1.0 CA A:GLU265 4.6 27.8 1.0 CE2 A:TYR410 4.6 26.0 1.0 O A:HOH662 4.9 28.0 1.0 O A:HOH666 4.9 37.9 1.0 CE1 A:TYR410 5.0 30.0 1.0

Rubidium binding site 2 out of 2 in the Crystal Structure of A Mate Family Protein Derived From Camelina Sativa at 2.3 Angstrom


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 2 of Crystal Structure of A Mate Family Protein Derived From Camelina Sativa at 2.3 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ A:Rb502 b:93.1 occ:1.00 O A:HOH654 3.2 26.9 1.0 OE2 A:GLU296 3.5 34.6 1.0 OE1 A:GLU296 3.6 28.4 1.0 CD A:GLU296 4.0 32.7 1.0 RB A:RB501 4.1 87.2 1.0 CD2 A:LEU268 4.2 29.2 1.0 CD1 A:LEU272 4.2 27.4 1.0 CG1 A:VAL436 4.5 26.7 1.0 CG2 A:VAL436 4.7 26.2 1.0 O A:HOH662 4.8 28.0 1.0 CG A:LEU268 4.9 35.0 1.0 CD2 A:LEU293 4.9 34.3 1.0 O A:HOH676 5.0 32.3 1.0

Y.Tanaka, S.Iwaki, T.Tsukazaki. Crystal Structure of A Plant Multidrug and Toxic Compound Extrusion Family Protein Structure V. 25 1455 2017.
ISSN: ISSN 1878-4186
PubMed: 28877507
DOI: 10.1016/J.STR.2017.07.009