Atomistry » Rubidium » PDB 5aw4-7w49 » 6bpg
Atomistry »
  Rubidium »
    PDB 5aw4-7w49 »
      6bpg »

Rubidium in PDB 6bpg: Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions

Enzymatic activity of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions

All present enzymatic activity of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions:
1.2.1.8;

Protein crystallography data

The structure of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions, PDB code: 6bpg was solved by E.F.Lopez-Orduna, R.A.Munoz-Clares, L.Gonzalez-Segura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.22 / 3.09
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 325.954, 130.358, 100.695, 90.00, 94.93, 90.00
R / Rfree (%) 18.1 / 23.4

Rubidium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Rubidium atom in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions (pdb code 6bpg). This binding sites where shown within 5.0 Angstroms radius around Rubidium atom.
In total 16 binding sites of Rubidium where determined in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions, PDB code: 6bpg:
Jump to Rubidium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Rubidium binding site 1 out of 16 in 6bpg

Go back to Rubidium Binding Sites List in 6bpg
Rubidium binding site 1 out of 16 in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 1 of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb501

b:70.7
occ:1.00
 O A:ILE27 2.8 55.8 1.0
OD1 A:ASP93 2.9 58.7 1.0
O A:VAL180 2.9 58.4 1.0
O A:ASP93 3.2 60.6 1.0
OG1 A:THR26 3.2 55.0 1.0
N A:ILE27 3.6 56.7 1.0
CG1 A:VAL180 3.7 56.0 1.0
C A:VAL180 3.8 56.1 1.0
C A:ILE27 3.9 57.0 1.0
CG A:ASP93 4.2 59.2 1.0
CG2 A:THR181 4.2 55.6 1.0
C A:ASP93 4.2 58.0 1.0
CA A:ILE27 4.3 57.9 1.0
O A:VAL329 4.3 56.5 1.0
CB A:THR26 4.4 55.8 1.0
C A:THR26 4.5 58.3 1.0
CA A:VAL180 4.5 55.0 1.0
CA A:THR26 4.6 57.5 1.0
CA A:ASP93 4.6 57.4 1.0
N A:THR181 4.7 55.4 1.0
CB A:VAL180 4.7 54.5 1.0
CA A:THR181 4.7 55.0 1.0
CB A:ILE27 4.8 59.0 1.0
CD A:PRO29 4.9 55.3 1.0
CB A:ASP93 5.0 56.3 1.0

Rubidium binding site 2 out of 16 in 6bpg

Go back to Rubidium Binding Sites List in 6bpg
Rubidium binding site 2 out of 16 in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 2 of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb502

b:54.4
occ:1.00
 O A:LYS457 2.6 40.7 1.0
O B:LEU246 2.9 41.8 1.0
O A:GLY460 2.9 43.5 1.0
CG2 A:VAL461 3.5 44.5 1.0
OE2 B:GLU248 3.7 46.7 1.0
C A:LYS457 3.8 41.2 1.0
C A:GLY460 3.9 44.9 1.0
CG B:GLU248 4.1 43.7 1.0
C B:LEU246 4.1 41.7 1.0
CD B:GLU248 4.2 48.8 1.0
N A:LYS457 4.3 40.4 1.0
OE1 B:GLU223 4.3 44.8 1.0
CD2 B:LEU246 4.3 43.5 1.0
CA A:LYS457 4.3 41.1 1.0
CA A:VAL461 4.4 43.0 1.0
N A:VAL461 4.5 45.6 1.0
N B:GLU248 4.6 41.4 1.0
CB A:VAL461 4.6 43.6 1.0
CA B:LYS247 4.6 40.2 1.0
C B:LYS247 4.7 39.8 1.0
C A:TYR456 4.7 40.1 1.0
CG B:LEU246 4.8 43.0 1.0
N B:LYS247 4.8 40.8 1.0
N A:GLN458 4.9 41.9 1.0
OE2 B:GLU223 4.9 47.5 1.0
O A:TYR456 4.9 40.6 1.0
CB B:LEU246 4.9 43.0 1.0
CD B:GLU223 4.9 46.0 1.0

Rubidium binding site 3 out of 16 in 6bpg

Go back to Rubidium Binding Sites List in 6bpg
Rubidium binding site 3 out of 16 in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 3 of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Rb501

b:47.0
occ:1.00
 O B:LYS457 2.6 40.4 1.0
O A:LEU246 2.9 40.2 1.0
O B:GLY460 3.0 38.0 1.0
C B:LYS457 3.8 40.5 1.0
CG2 B:VAL461 3.8 38.8 1.0
OE1 A:GLU223 3.9 44.8 1.0
CG A:GLU248 4.0 40.8 1.0
C B:GLY460 4.1 38.2 1.0
C A:LEU246 4.1 40.7 1.0
OE2 A:GLU248 4.3 42.9 1.0
N B:LYS457 4.3 39.1 1.0
CA B:LYS457 4.4 39.7 1.0
N A:GLU248 4.5 41.1 1.0
CD2 A:LEU246 4.6 40.7 1.0
CD A:GLU248 4.6 42.5 1.0
CA A:LYS247 4.6 40.2 1.0
C A:LYS247 4.7 39.7 1.0
C B:TYR456 4.7 39.4 1.0
CG A:LEU246 4.8 40.4 1.0
CA B:VAL461 4.8 38.1 1.0
N B:VAL461 4.8 38.5 1.0
CD A:GLU223 4.8 46.3 1.0
N B:GLN458 4.9 39.6 1.0
OE2 A:GLU223 4.9 45.7 1.0
N A:LYS247 4.9 40.4 1.0
O B:TYR456 4.9 40.1 1.0
CB A:LEU246 5.0 40.5 1.0
N B:GLY460 5.0 38.8 1.0
CB B:VAL461 5.0 38.5 1.0

Rubidium binding site 4 out of 16 in 6bpg

Go back to Rubidium Binding Sites List in 6bpg
Rubidium binding site 4 out of 16 in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 4 of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Rb502

b:50.7
occ:1.00
 O B:ILE27 2.8 36.5 1.0
O B:VAL180 2.8 35.6 1.0
O B:ASP93 2.9 38.4 1.0
OG1 B:THR26 3.2 34.9 1.0
OD1 B:ASP93 3.2 37.8 1.0
N B:ILE27 3.6 37.5 1.0
C B:ILE27 3.8 37.4 1.0
C B:VAL180 3.8 35.5 1.0
CG1 B:VAL180 3.9 36.4 1.0
C B:ASP93 3.9 38.2 1.0
CA B:ILE27 4.2 38.1 1.0
CG B:ASP93 4.3 38.4 1.0
CA B:ASP93 4.3 38.4 1.0
CG2 B:THR181 4.4 36.8 1.0
CB B:THR26 4.4 35.7 1.0
C B:THR26 4.4 37.0 1.0
CA B:VAL180 4.5 35.8 1.0
CA B:THR26 4.6 36.6 1.0
N B:THR181 4.7 36.9 1.0
CD B:PRO29 4.8 37.6 1.0
CA B:THR181 4.8 37.0 1.0
CB B:VAL180 4.9 36.0 1.0
CB B:ASP93 4.9 38.4 1.0
N B:ASN28 4.9 38.5 1.0
CB B:ILE27 4.9 38.7 1.0
O B:VAL329 4.9 40.0 1.0

Rubidium binding site 5 out of 16 in 6bpg

Go back to Rubidium Binding Sites List in 6bpg
Rubidium binding site 5 out of 16 in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 5 of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Rb501

b:55.9
occ:1.00
 O C:LYS457 2.9 43.6 1.0
O D:LEU246 2.9 41.6 1.0
O C:GLY460 3.1 42.1 1.0
OE2 D:GLU223 3.4 43.8 1.0
OE2 D:GLU248 3.8 50.0 1.0
CG D:GLU248 3.8 43.2 1.0
OE1 D:GLU223 3.8 46.1 1.0
CD D:GLU223 3.8 45.0 1.0
C C:LYS457 4.0 44.1 1.0
C D:LEU246 4.1 41.9 1.0
CD D:GLU248 4.2 49.3 1.0
CG2 C:VAL461 4.3 44.3 1.0
C C:GLY460 4.3 42.0 1.0
N C:LYS457 4.3 43.5 1.0
CA C:LYS457 4.5 44.2 1.0
N D:GLU248 4.5 41.1 1.0
CA D:LYS247 4.7 39.7 1.0
C C:TYR456 4.8 41.4 1.0
C D:LYS247 4.8 39.6 1.0
CA C:VAL461 4.8 42.5 1.0
N D:LYS247 4.9 40.5 1.0
CB D:LEU246 4.9 44.5 1.0
O C:GLY455 4.9 41.6 1.0
N C:VAL461 5.0 42.8 1.0
O D:GLU223 5.0 39.4 1.0

Rubidium binding site 6 out of 16 in 6bpg

Go back to Rubidium Binding Sites List in 6bpg
Rubidium binding site 6 out of 16 in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 6 of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Rb502

b:77.8
occ:1.00
 O C:ILE27 2.8 67.1 1.0
O C:ASP93 3.0 65.3 1.0
OG1 C:THR26 3.1 62.6 1.0
O C:VAL180 3.1 63.8 1.0
OD1 C:ASP93 3.3 65.0 1.0
N C:ILE27 3.6 65.3 1.0
C C:ILE27 3.8 66.3 1.0
CG1 C:VAL180 4.0 63.4 1.0
C C:ASP93 4.0 63.0 1.0
C C:VAL180 4.1 62.0 1.0
CA C:ILE27 4.3 66.9 1.0
CB C:THR26 4.3 63.5 1.0
CG C:ASP93 4.3 64.2 1.0
CA C:ASP93 4.3 63.5 1.0
O C:VAL329 4.3 62.7 1.0
C C:THR26 4.4 66.7 1.0
CG2 C:THR181 4.5 60.6 1.0
CA C:THR26 4.6 65.9 1.0
CD C:PRO29 4.6 63.4 1.0
CA C:VAL180 4.8 60.2 1.0
N C:ASN28 4.8 67.1 1.0
CB C:ASP93 4.9 63.4 1.0
N C:THR181 4.9 62.3 1.0
CA C:THR181 5.0 61.7 1.0

Rubidium binding site 7 out of 16 in 6bpg

Go back to Rubidium Binding Sites List in 6bpg
Rubidium binding site 7 out of 16 in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 7 of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Rb501

b:53.0
occ:1.00
 O D:LYS457 2.7 39.2 1.0
O C:LEU246 2.9 41.3 1.0
O D:GLY460 3.4 39.2 1.0
OE1 C:GLU223 3.7 39.7 1.0
C D:LYS457 3.8 40.1 1.0
CG2 D:VAL461 3.8 40.6 1.0
C C:LEU246 4.1 41.7 1.0
CD C:GLU248 4.1 47.6 1.0
OE2 C:GLU223 4.2 41.0 1.0
OE2 C:GLU248 4.2 46.5 1.0
N D:LYS457 4.2 39.6 1.0
CA D:LYS457 4.3 41.1 1.0
CG C:GLU248 4.3 44.3 1.0
CD C:GLU223 4.4 40.1 1.0
C D:GLY460 4.4 39.0 1.0
CA C:LYS247 4.6 41.8 1.0
N C:GLU248 4.6 42.1 1.0
OE1 C:GLU248 4.6 48.8 1.0
C C:LYS247 4.8 41.6 1.0
N C:LYS247 4.8 42.3 1.0
C D:TYR456 4.8 36.9 1.0
CG C:LEU246 4.9 42.5 1.0
CB D:VAL461 4.9 40.0 1.0
CA D:VAL461 5.0 39.5 1.0
O C:GLU223 5.0 39.9 1.0
N D:GLN458 5.0 41.6 1.0
CD2 C:LEU246 5.0 43.5 1.0

Rubidium binding site 8 out of 16 in 6bpg

Go back to Rubidium Binding Sites List in 6bpg
Rubidium binding site 8 out of 16 in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 8 of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Rb502

b:58.2
occ:1.00
 O D:ILE27 2.7 42.9 1.0
O D:ASP93 2.8 46.5 1.0
O D:VAL180 3.1 42.5 1.0
OD1 D:ASP93 3.2 46.8 1.0
OG1 D:THR26 3.3 40.6 1.0
N D:ILE27 3.7 41.8 1.0
C D:ILE27 3.8 42.8 1.0
C D:ASP93 3.8 45.8 1.0
CG1 D:VAL180 3.9 43.9 1.0
C D:VAL180 4.2 42.0 1.0
CA D:ASP93 4.2 45.4 1.0
CG D:ASP93 4.3 45.7 1.0
CA D:ILE27 4.3 43.4 1.0
C D:THR26 4.5 42.6 1.0
CB D:THR26 4.5 41.0 1.0
O D:VAL329 4.5 43.8 1.0
CD D:PRO29 4.6 42.0 1.0
CA D:THR26 4.7 41.8 1.0
CG D:PRO29 4.7 41.5 1.0
CB D:ASP93 4.8 44.5 1.0
CG2 D:THR181 4.8 44.5 1.0
N D:ASN28 4.8 42.8 1.0
CA D:VAL180 4.9 42.6 1.0
O D:LEU92 4.9 43.6 1.0

Rubidium binding site 9 out of 16 in 6bpg

Go back to Rubidium Binding Sites List in 6bpg
Rubidium binding site 9 out of 16 in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 9 of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Rb501

b:43.2
occ:1.00
 O E:LYS457 2.8 37.0 1.0
O F:LEU246 2.9 37.6 1.0
O E:GLY460 3.0 35.8 1.0
OE1 F:GLU223 3.4 42.6 1.0
CG2 E:VAL461 4.0 36.2 1.0
C E:LYS457 4.0 36.9 1.0
C F:LEU246 4.1 37.3 1.0
C E:GLY460 4.2 36.0 1.0
CD F:GLU223 4.4 44.2 1.0
N E:LYS457 4.5 35.9 1.0
N F:GLU248 4.5 37.8 1.0
CD2 F:LEU246 4.6 37.4 1.0
CA E:LYS457 4.6 36.5 1.0
CA F:LYS247 4.6 36.8 1.0
OE2 F:GLU223 4.7 43.2 1.0
CA E:VAL461 4.7 35.1 1.0
C F:LYS247 4.8 36.9 1.0
CB F:LEU246 4.8 37.0 1.0
CG F:LEU246 4.8 37.1 1.0
N F:LYS247 4.8 36.4 1.0
N E:VAL461 4.9 35.0 1.0
CB E:VAL461 4.9 36.0 1.0
C E:TYR456 4.9 35.8 1.0

Rubidium binding site 10 out of 16 in 6bpg

Go back to Rubidium Binding Sites List in 6bpg
Rubidium binding site 10 out of 16 in the Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 10 of Crystal Structure of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa with Bound Rubidium Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Rb502

b:67.2
occ:1.00
 O E:ASP93 2.7 50.5 1.0
O E:VAL180 3.0 47.4 1.0
O E:ILE27 3.0 47.6 1.0
OG1 E:THR26 3.1 46.2 1.0
OD1 E:ASP93 3.4 50.7 1.0
C E:ASP93 3.8 49.5 1.0
N E:ILE27 3.8 47.2 1.0
C E:ILE27 4.0 47.5 1.0
C E:VAL180 4.0 45.9 1.0
CG1 E:VAL180 4.1 49.7 1.0
O E:VAL329 4.3 48.1 1.0
CG E:ASP93 4.3 49.7 1.0
CA E:ASP93 4.3 48.5 1.0
CB E:THR26 4.4 46.7 1.0
CA E:ILE27 4.5 47.8 1.0
CG2 E:THR181 4.5 48.2 1.0
C E:THR26 4.6 47.9 1.0
CG E:PRO29 4.7 47.5 1.0
CA E:THR26 4.7 47.3 1.0
CA E:VAL180 4.7 46.6 1.0
CD E:PRO29 4.7 48.3 1.0
N E:THR181 4.8 47.3 1.0
CB E:ASP93 4.9 48.0 1.0
CA E:THR181 4.9 47.8 1.0
N E:THR94 4.9 47.9 1.0

Reference:

E.F.Lopez-Orduna, R.A.Munoz-Clares, L.Gonzalez-Segura. Crystallographic Identification of Monovalent Cation-Binding Sites in Two Betaine Aldehyde Dehydrogenases To Be Published.
Page generated: Wed Dec 16 02:07:11 2020

Last articles

Cl in 6COG
Cl in 6CST
Cl in 6CTW
Cl in 6CTZ
Cl in 6CTT
Cl in 6CSP
Cl in 6CU9
Cl in 6CTX
Cl in 6CTU
Cl in 6CTP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy