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Rubidium in PDB 3hwb: Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction

Protein crystallography data

The structure of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction, PDB code: 3hwb was solved by D.Balasundaresan, S.Raychaudhury, L.Blachowicz, B.Roux, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.55 / 3.00
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 117.192, 117.192, 116.885, 90.00, 90.00, 120.00
R / Rfree (%) 23.1 / 28.5

Rubidium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 19;

Binding sites:

The binding sites of Rubidium atom in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction (pdb code 3hwb). This binding sites where shown within 5.0 Angstroms radius around Rubidium atom.
In total 19 binding sites of Rubidium where determined in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction, PDB code: 3hwb:
Jump to Rubidium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Rubidium binding site 1 out of 19 in 3hwb

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Rubidium binding site 1 out of 19 in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 1 of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction within 5.0Å range:

Rubidium binding site 2 out of 19 in 3hwb

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Rubidium binding site 2 out of 19 in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 2 of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction within 5.0Å range:

Rubidium binding site 3 out of 19 in 3hwb

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Rubidium binding site 3 out of 19 in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 3 of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb343

b:65.3
occ:0.21
 O A:LYS160 3.5 39.9 1.0
OD1 A:ASN161 3.8 43.6 1.0
CA A:GLY159 3.9 31.8 1.0
C A:GLY159 3.9 34.2 1.0
N A:LYS160 4.0 36.8 1.0
CA A:GLY135 4.1 36.9 1.0
OH A:TYR98 4.2 32.0 1.0
C A:LYS160 4.3 40.0 1.0
O A:GLY159 4.5 33.0 1.0
CA A:LYS160 4.7 39.2 1.0
CG A:ASN161 4.8 40.1 1.0
N A:GLY159 4.9 29.6 1.0
O A:GLY135 4.9 39.0 1.0

Rubidium binding site 4 out of 19 in 3hwb

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Rubidium binding site 4 out of 19 in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 4 of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb344

b:90.3
occ:0.62
 O A:HOH369 2.8 43.7 1.0
N A:GLY135 2.8 35.6 1.0
C A:GLY99 3.4 37.7 1.0
CA A:GLY135 3.5 36.9 1.0
N A:ARG100 3.6 35.7 1.0
CA A:GLY99 3.6 37.5 1.0
C A:GLY134 3.7 34.0 1.0
N A:VAL136 3.8 35.6 1.0
CA A:GLY134 3.8 32.3 1.0
O A:GLY99 3.9 40.4 1.0
N A:GLY99 3.9 34.8 1.0
CE2 A:TYR98 3.9 27.6 1.0
CZ A:TYR98 3.9 28.8 1.0
OH A:TYR98 4.1 32.0 1.0
C A:GLY135 4.2 37.8 1.0
CA A:ARG100 4.2 32.0 1.0
CD2 A:TYR98 4.5 28.9 1.0
CE1 A:TYR98 4.5 31.0 1.0
CG2 A:VAL136 4.7 31.1 1.0
O A:VAL136 4.8 30.7 1.0
O A:VAL133 4.9 29.5 1.0
O A:GLY134 4.9 35.1 1.0
CB A:ARG100 4.9 30.3 1.0
CA A:VAL136 5.0 34.6 1.0

Rubidium binding site 5 out of 19 in 3hwb

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Rubidium binding site 5 out of 19 in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 5 of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction within 5.0Å range:

Rubidium binding site 6 out of 19 in 3hwb

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Rubidium binding site 6 out of 19 in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 6 of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction within 5.0Å range:

Rubidium binding site 7 out of 19 in 3hwb

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Rubidium binding site 7 out of 19 in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 7 of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb347

b:37.2
occ:0.31
 OH A:TYR102 4.1 33.2 1.0
CZ A:TYR102 4.2 31.7 1.0
CE2 A:TYR102 4.3 32.6 1.0
OH A:TYR106 4.5 21.6 1.0
CE2 A:TYR106 4.6 25.0 1.0
CE1 A:TYR102 4.9 30.1 1.0

Rubidium binding site 8 out of 19 in 3hwb

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Rubidium binding site 8 out of 19 in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 8 of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction within 5.0Å range:

Rubidium binding site 9 out of 19 in 3hwb

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Rubidium binding site 9 out of 19 in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 9 of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb349

b:64.6
occ:0.24
 O A:TYR302 4.6 36.1 1.0
CB A:TYR302 4.8 33.8 1.0
CA A:ASN304 4.8 39.8 1.0
CA A:GLY268 4.9 40.5 1.0

Rubidium binding site 10 out of 19 in 3hwb

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Rubidium binding site 10 out of 19 in the Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Rubidium with other atoms in the Rb binding site number 10 of Cation Selective Pathway of Ompf Porin Revealed By Anomalous Diffraction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Rb350

b:0.1
occ:0.18
 O A:THR300 2.9 29.3 1.0
NE2 A:GLN264 3.3 39.1 1.0
N A:TYR302 3.4 32.9 1.0
N A:ARG270 3.4 39.2 1.0
CD2 A:TYR302 3.4 35.7 1.0
O A:GLY268 3.5 40.2 1.0
C A:GLY268 3.6 39.9 1.0
C A:THR300 3.6 29.5 1.0
CG A:TYR302 3.6 33.8 1.0
CB A:ARG270 3.7 37.5 1.0
OE1 A:GLN264 3.7 39.1 1.0
N A:LEU269 3.7 39.1 1.0
C A:LEU269 3.7 39.0 1.0
CA A:LEU269 3.8 38.5 1.0
CA A:TYR301 3.9 30.2 1.0
CD A:GLN264 3.9 39.0 1.0
CE2 A:TYR302 3.9 36.6 1.0
CB A:TYR302 4.0 33.8 1.0
C A:TYR301 4.1 31.5 1.0
N A:TYR301 4.1 30.7 1.0
CA A:ARG270 4.1 38.9 1.0
CA A:TYR302 4.3 34.5 1.0
CD1 A:TYR302 4.3 34.7 1.0
CA A:GLY268 4.3 40.5 1.0
CB A:THR300 4.5 30.0 1.0
O A:LEU269 4.5 39.0 1.0
CZ A:TYR302 4.5 35.3 1.0
CA A:THR300 4.7 28.7 1.0
CE1 A:TYR302 4.7 35.3 1.0
CG2 A:THR300 4.8 30.2 1.0

Reference:

B.Dhakshnamoorthy, S.Raychaudhury, L.Blachowicz, B.Roux. Cation-Selective Pathway of Ompf Porin Revealed By Anomalous X-Ray Diffraction. J.Mol.Biol. V. 396 293 2010.
ISSN: ISSN 0022-2836
PubMed: 19932117
DOI: 10.1016/J.JMB.2009.11.042
Page generated: Thu Oct 10 12:00:38 2024

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